Ng TCR organization and its influence on gene segment recombination probability. TCR V segments are separated by long intervals, J segments by shorter intervals (dashed lines); the ratio of log segment length to log spacing is approximately 1.4 for V segments and approximately 1.3 for J segments. Relative interval between successive V segments and the J segments in the TRA locus (top blue curve) declines logarithmically with a slope of approximately 1.3. Sine and cosine function value of the start nucleotides of each V segment extrapolated to the sense (green) and antisense (blue) DNA strands, demonstrate that the gene segments are accurately aligned once the logarithmic organization is accounted for. Hypothetically, the segment location on the two DNA helices being in-phase or out-of-phase may impact the energetics of DNA ?RAG enzyme interaction and thus the probability amplitude (orange line, going from 0 to 1) for gene segment recombination analogous to wave interference phenomenon. In the model depicted, V1 location on the two helices is out of phase, V2 is partially in phase and V3 is completely in phase. Closely clustered together J segments are more likely to be in phase.from the rearranging segment, Db or Ja), may influence its usage in repertoire generation resulting in the periodic distribution of the V and J segment usage in T-cell clones when the locus is interrogated from the 50 to 30 end. Essentially, this means that using analytical techniques such as Fourier’s series, probability amplitudes may be determined for the various gene segments on the TCR loci based on their positions. It may be very likely that the recombination is most frequent for gene segments that occur at a certain `harmonic’ frequency. As an example in the data presented, the TRB-V segment clonal frequency appears to oscillate with a wavelength of approximately 50?0 000 radians from the TRB-D segment (figure 4). This organizational Y-27632MedChemExpress Y-27632 pattern is also observed in the distribution of V gene segments capable of recombining with TRD-D segments, which are approximately 100 000 radians apart on the TRA locus, scattered among the TRA-specific V genes (figure 3). It may be speculated that the gene segment distribution periods represent optimal energy distribution for recombination to occur on the long helical DNA molecule, analogous to the interference phenomenon encountered in wave mechanics. This is plausible Y-27632MedChemExpress Y-27632 because the DNA double helices may represent two superposed waves, and the gene segment location may lend itself to either constructive or destructive interference, impacting the interaction with RAG enzymes and recombination potential. This would in turn determine the probability amplitude of that gene segment being represented in the final T-cell clonal repertoire (figure 5). Evidence to support a role for varying energy distribution along the DNA molecules is beginning to emerge as, such as, in modelling electron clouds of DNA molecules as chains of coupled harmonic oscillators have demonstrated the association between the quantum entanglement in the electron clouds of DNA molecules and the local binding energy [39]. It has also been demonstrated that the lower energy requirements for bending and rotation of the CG-rich DNA sequences, allows more efficient bending of DNA molecules around histones, resulting in greater CG content around nucleosomal DNA [40]. In this theoretical paper, we demonstrate that the TCR loci have an iterative, logarithmically scal.Ng TCR organization and its influence on gene segment recombination probability. TCR V segments are separated by long intervals, J segments by shorter intervals (dashed lines); the ratio of log segment length to log spacing is approximately 1.4 for V segments and approximately 1.3 for J segments. Relative interval between successive V segments and the J segments in the TRA locus (top blue curve) declines logarithmically with a slope of approximately 1.3. Sine and cosine function value of the start nucleotides of each V segment extrapolated to the sense (green) and antisense (blue) DNA strands, demonstrate that the gene segments are accurately aligned once the logarithmic organization is accounted for. Hypothetically, the segment location on the two DNA helices being in-phase or out-of-phase may impact the energetics of DNA ?RAG enzyme interaction and thus the probability amplitude (orange line, going from 0 to 1) for gene segment recombination analogous to wave interference phenomenon. In the model depicted, V1 location on the two helices is out of phase, V2 is partially in phase and V3 is completely in phase. Closely clustered together J segments are more likely to be in phase.from the rearranging segment, Db or Ja), may influence its usage in repertoire generation resulting in the periodic distribution of the V and J segment usage in T-cell clones when the locus is interrogated from the 50 to 30 end. Essentially, this means that using analytical techniques such as Fourier’s series, probability amplitudes may be determined for the various gene segments on the TCR loci based on their positions. It may be very likely that the recombination is most frequent for gene segments that occur at a certain `harmonic’ frequency. As an example in the data presented, the TRB-V segment clonal frequency appears to oscillate with a wavelength of approximately 50?0 000 radians from the TRB-D segment (figure 4). This organizational pattern is also observed in the distribution of V gene segments capable of recombining with TRD-D segments, which are approximately 100 000 radians apart on the TRA locus, scattered among the TRA-specific V genes (figure 3). It may be speculated that the gene segment distribution periods represent optimal energy distribution for recombination to occur on the long helical DNA molecule, analogous to the interference phenomenon encountered in wave mechanics. This is plausible because the DNA double helices may represent two superposed waves, and the gene segment location may lend itself to either constructive or destructive interference, impacting the interaction with RAG enzymes and recombination potential. This would in turn determine the probability amplitude of that gene segment being represented in the final T-cell clonal repertoire (figure 5). Evidence to support a role for varying energy distribution along the DNA molecules is beginning to emerge as, such as, in modelling electron clouds of DNA molecules as chains of coupled harmonic oscillators have demonstrated the association between the quantum entanglement in the electron clouds of DNA molecules and the local binding energy [39]. It has also been demonstrated that the lower energy requirements for bending and rotation of the CG-rich DNA sequences, allows more efficient bending of DNA molecules around histones, resulting in greater CG content around nucleosomal DNA [40]. In this theoretical paper, we demonstrate that the TCR loci have an iterative, logarithmically scal.

Ranch, 21 Jun 1885, C.R.Orcutt 1276 (DS, DS, US). 63 mi SE of Ensenada, 2? mi upstream of Rincon, 4.5 mi NE of Santa Catarina, canyon, 4300 ft [1310 m] 22 Apr 1962, R.E.Broder 772 (DS, US). 4 1/2 mi S of Portezuelo de Jamau, N of Cerro 1905, ca. 31?4’N, 115?6’W, 1775 m, 20 Apr 1974, R.Moran 21226 (CAS, ARIZ, TAES, US). Sierra Juarez, El Progresso, ca. 32?7’N, 115?6′ W, 1450 m, 24 MayRobert J. Soreng Paul M. Peterson / PhytoKeys 15: 1?04 (2012)1975, R.Moran 22044 (TAES); ditto, N slope just below summit of Cerro Jamau, ca. 31?4’N, 115?5.5’W, 1890 m, 23 May 1976, R.Moran 23257 (TAES); ditto, in steep north slope of Cerro Taraizo, southernmost peak of range, ca. 31?1.75’N, 115?1’W, 1550 m, R.Moran 23007 (TAES, ARIZ, US); ditto, vicinity of Rancho La Mora, 32?1’N, 115?7’W, 12 Apr 1987, C.Brey 192 (TAES). Rancho El Topo, 2 May 1981, A.A.Beetle R.Alcaraz M-6649 (ARIZ, WYAC). Sierra San Pedro M tir, Ca n del Diablo, 31?0’N, 115?4’W, 1700 m, 6 May 1978, R.Moran 25626 (TAES). Discussion. This taxon was accepted as P. longiligula by Espejo Serna et al. (2000). Some plants in Baja California of this subspecies are intermediate to P. fendleriana subsp. fendleriana, but in general the longer smoother margined ligules and puberulent rachillas are diagnostic. Where the two taxa occur in the same area P. fendleriana subsp. longiligula occurs in more xeric habitats, and P. fendleriana subsp. fendleriana is found in higher elevations.9. Poa gymnantha Pilg., Bot. Jahrb. Syst. 56 (Beibl. 123): 28. 1920. http://species-id.net/wiki/Poa_gymnantha Figs 6 A , 9 Type: Peru, 15?0′ to 16?0’S, s lich von Sumbay, Eisenbahn Arequipa uno, Tola eide, 4000 m, Apr 1914, A.Weberbauer 6905 (lectotype: S! designated by Anton and Negritto 1997: 236; isolectotypes: BAA-2555!, MOL!, US-1498091!, US-2947085! specimen fragm. ex B, USM!). Poa ovata Tovar, Mem. Mus. Hist. Nat. “Javier Prado” 15: 17, t.3A. 1965. Type: Peru, Cuzco, Prov. Quispicanchis, en el Paso de Hualla-hualla, 4700 m, 29 Jan 1943, C.Vargas 3187 (holotype: US1865932!). Poa pseudoaequigluma Tovar, Bol. Soc. Peruana Bot. 7: 8. 1874. Type: Peru, Ayacucho, Prov. Lucanas, Pampa Galeras, Reserva Nacional de Vicunas, entre Nazca y Puquio, Valle de Cupitay, 4000 m, 4 Apr 1970, O.Tovar Franklin 6631 (holotype: USM!; isotypes: CORD!, MO-3812380!, US-2942178!, US-3029235!). Description. Pistillate. Perennials; tufted, tufts dense, usually narrow, low (4? cm tall), pale green; tillers intravaginal (each subtended by a single elongated, 2-keeled, longitudinally split prophyll), without cataphyllous shoots, sterile shoots more numerous than flowering shoots. Culms 4? (45) cm tall, erect or arching, leaves mostly basal, terete or weakly compressed, smooth; nodes terete, 0?, not exerted, Anlotinib chemical information deeply buried in basal tuft. Leaves mostly basal; leaf sheaths laterally slightly compressed, indistinctly keeled, basal ones with cross-veins, smooth, glabrous; butt sheaths becoming papery to somewhat fibrous, smooth, glabrous; flag leaf sheaths 2?.5(?0) cm long, margins fused 30?0 their length, ca. 2.5 ?longer than its blade; throats and collars smooth or slightly scabrous, glabrous; ligules to 1?.5(?) mm long, decurrent, scari-Revision of Poa L. (Poaceae, Pooideae, Poeae, Poinae) in Mexico: …Figure 9. Poa gymnantha Pilg. Photo of Beaman 2342.ous, colorless, abaxially moderately densely scabrous to hirtellous, apex get PD98059 truncate to obtuse, upper margin erose to denticulate, sterile shoot ligules equaling or shorter than those of the up.Ranch, 21 Jun 1885, C.R.Orcutt 1276 (DS, DS, US). 63 mi SE of Ensenada, 2? mi upstream of Rincon, 4.5 mi NE of Santa Catarina, canyon, 4300 ft [1310 m] 22 Apr 1962, R.E.Broder 772 (DS, US). 4 1/2 mi S of Portezuelo de Jamau, N of Cerro 1905, ca. 31?4’N, 115?6’W, 1775 m, 20 Apr 1974, R.Moran 21226 (CAS, ARIZ, TAES, US). Sierra Juarez, El Progresso, ca. 32?7’N, 115?6′ W, 1450 m, 24 MayRobert J. Soreng Paul M. Peterson / PhytoKeys 15: 1?04 (2012)1975, R.Moran 22044 (TAES); ditto, N slope just below summit of Cerro Jamau, ca. 31?4’N, 115?5.5’W, 1890 m, 23 May 1976, R.Moran 23257 (TAES); ditto, in steep north slope of Cerro Taraizo, southernmost peak of range, ca. 31?1.75’N, 115?1’W, 1550 m, R.Moran 23007 (TAES, ARIZ, US); ditto, vicinity of Rancho La Mora, 32?1’N, 115?7’W, 12 Apr 1987, C.Brey 192 (TAES). Rancho El Topo, 2 May 1981, A.A.Beetle R.Alcaraz M-6649 (ARIZ, WYAC). Sierra San Pedro M tir, Ca n del Diablo, 31?0’N, 115?4’W, 1700 m, 6 May 1978, R.Moran 25626 (TAES). Discussion. This taxon was accepted as P. longiligula by Espejo Serna et al. (2000). Some plants in Baja California of this subspecies are intermediate to P. fendleriana subsp. fendleriana, but in general the longer smoother margined ligules and puberulent rachillas are diagnostic. Where the two taxa occur in the same area P. fendleriana subsp. longiligula occurs in more xeric habitats, and P. fendleriana subsp. fendleriana is found in higher elevations.9. Poa gymnantha Pilg., Bot. Jahrb. Syst. 56 (Beibl. 123): 28. 1920. http://species-id.net/wiki/Poa_gymnantha Figs 6 A , 9 Type: Peru, 15?0′ to 16?0’S, s lich von Sumbay, Eisenbahn Arequipa uno, Tola eide, 4000 m, Apr 1914, A.Weberbauer 6905 (lectotype: S! designated by Anton and Negritto 1997: 236; isolectotypes: BAA-2555!, MOL!, US-1498091!, US-2947085! specimen fragm. ex B, USM!). Poa ovata Tovar, Mem. Mus. Hist. Nat. “Javier Prado” 15: 17, t.3A. 1965. Type: Peru, Cuzco, Prov. Quispicanchis, en el Paso de Hualla-hualla, 4700 m, 29 Jan 1943, C.Vargas 3187 (holotype: US1865932!). Poa pseudoaequigluma Tovar, Bol. Soc. Peruana Bot. 7: 8. 1874. Type: Peru, Ayacucho, Prov. Lucanas, Pampa Galeras, Reserva Nacional de Vicunas, entre Nazca y Puquio, Valle de Cupitay, 4000 m, 4 Apr 1970, O.Tovar Franklin 6631 (holotype: USM!; isotypes: CORD!, MO-3812380!, US-2942178!, US-3029235!). Description. Pistillate. Perennials; tufted, tufts dense, usually narrow, low (4? cm tall), pale green; tillers intravaginal (each subtended by a single elongated, 2-keeled, longitudinally split prophyll), without cataphyllous shoots, sterile shoots more numerous than flowering shoots. Culms 4? (45) cm tall, erect or arching, leaves mostly basal, terete or weakly compressed, smooth; nodes terete, 0?, not exerted, deeply buried in basal tuft. Leaves mostly basal; leaf sheaths laterally slightly compressed, indistinctly keeled, basal ones with cross-veins, smooth, glabrous; butt sheaths becoming papery to somewhat fibrous, smooth, glabrous; flag leaf sheaths 2?.5(?0) cm long, margins fused 30?0 their length, ca. 2.5 ?longer than its blade; throats and collars smooth or slightly scabrous, glabrous; ligules to 1?.5(?) mm long, decurrent, scari-Revision of Poa L. (Poaceae, Pooideae, Poeae, Poinae) in Mexico: …Figure 9. Poa gymnantha Pilg. Photo of Beaman 2342.ous, colorless, abaxially moderately densely scabrous to hirtellous, apex truncate to obtuse, upper margin erose to denticulate, sterile shoot ligules equaling or shorter than those of the up.

Nnot be regarded as the result of a general depression of metabolism only, but it involves the complex interplay between up-regulation and down-regulation of diverse cellular activities. Hence, efforts should be made in the future to identify and differentiate molecular, biochemical and physiological phenomena in AfricanPLOS ONE | DOI:10.1371/journal.pone.0121224 March 30,23 /Differential Gene Expression in the Liver of the African Lungfishlungfishes incidental to each of the three phases (induction, maintenance and arousal) of aestivation.Author ContributionsConceived and designed the experiments: YKI SFC. Performed the experiments: KCH. Analyzed the data: KCH SFC YKI. Contributed reagents/materials/analysis tools: WPW. Wrote the paper: SFC KCH YKI. Took care of the animals: WPW.
Lyme borreliosis (LB), caused by spirochete Borrelia burgdorferi sensu lato, is a tick-borne infection common in northern hemisphere [1]. Borrelia burgdorferi sensu lato is further classified into several genospecies of which Borrelia burgdorferi sensu stricto (B. burgdorferi), Borrelia garinii and Borrelia afzelii are clinically the most important human pathogens. From the inoculation site in the skin, the bacteria can disseminate to other organs like the heart, joints and the nervous system, and cause a persistent infection in these foci. However, the molecules targeting the spirochete to the various tissues remain incompletely characterized. Animal models, especially with mice, are widely used to study the dissemination and treatment response of LB. B. burgdorferi infected C3H mice develop prominent joint manifestations with joint swelling, periarticular oedema and leukocyte infiltration [2]. Some studies suggest that B. burgdorferi infected and antibiotic treated mice still harbour live but obviously attenuated and non-cultivable bacteria especially in collagen-rich tissues [3?]. Parallel results have been obtained also using dogs and rhesus macaques [6, 7]. We have previously shown that a part of B. burgdorferi infected C3H/He mice treated with ceftriaxone became B. burgdorferi culture positive after immunosuppression by anti-TNF-alpha [8]. In contrast, recent mouse data obtained using intravital microscopy of antibiotic treated mice suggest that persisting B. burgdorferi antigens rather than an on-going infection can be detected in mouse joint after the treatment [9]. Taken together, the above animal data suggest the persistence of some form of B. burgdorferi remnants in animal joints after antibiotic treatment. The molecular mechanisms of this phenomenon are poorly understood. Borrelia burgdorferi sensu lato has several adhesins, which are of critical ICG-001 site importance for the virulence [10, 11]. Two such adhesins are decorin binding proteins A and B (DbpA/B) [12?6]. DbpA/B mediate bacterial PX-478 site attachment to decorin, which is a major component at the extracellular matrix, especially in the joint, skin and endothelial tissue [17?9]. The importance of B. burgdorferi adhesion to decorin is further underlined by the partial resistance of decorin deficient mice to LB [20]. Recent mouse data suggest a role for DbpA in the development of joint manifestations in mice [21, 22]. Interestingly, it is suggested that decorin rich tissues, like the joint, might serve as a protective niche for B. burgdorferi where the bacteria can hide from the immune response [23]. The present study was undertaken to test the hypothesis that DbpA and/or B are required for the development of joi.Nnot be regarded as the result of a general depression of metabolism only, but it involves the complex interplay between up-regulation and down-regulation of diverse cellular activities. Hence, efforts should be made in the future to identify and differentiate molecular, biochemical and physiological phenomena in AfricanPLOS ONE | DOI:10.1371/journal.pone.0121224 March 30,23 /Differential Gene Expression in the Liver of the African Lungfishlungfishes incidental to each of the three phases (induction, maintenance and arousal) of aestivation.Author ContributionsConceived and designed the experiments: YKI SFC. Performed the experiments: KCH. Analyzed the data: KCH SFC YKI. Contributed reagents/materials/analysis tools: WPW. Wrote the paper: SFC KCH YKI. Took care of the animals: WPW.
Lyme borreliosis (LB), caused by spirochete Borrelia burgdorferi sensu lato, is a tick-borne infection common in northern hemisphere [1]. Borrelia burgdorferi sensu lato is further classified into several genospecies of which Borrelia burgdorferi sensu stricto (B. burgdorferi), Borrelia garinii and Borrelia afzelii are clinically the most important human pathogens. From the inoculation site in the skin, the bacteria can disseminate to other organs like the heart, joints and the nervous system, and cause a persistent infection in these foci. However, the molecules targeting the spirochete to the various tissues remain incompletely characterized. Animal models, especially with mice, are widely used to study the dissemination and treatment response of LB. B. burgdorferi infected C3H mice develop prominent joint manifestations with joint swelling, periarticular oedema and leukocyte infiltration [2]. Some studies suggest that B. burgdorferi infected and antibiotic treated mice still harbour live but obviously attenuated and non-cultivable bacteria especially in collagen-rich tissues [3?]. Parallel results have been obtained also using dogs and rhesus macaques [6, 7]. We have previously shown that a part of B. burgdorferi infected C3H/He mice treated with ceftriaxone became B. burgdorferi culture positive after immunosuppression by anti-TNF-alpha [8]. In contrast, recent mouse data obtained using intravital microscopy of antibiotic treated mice suggest that persisting B. burgdorferi antigens rather than an on-going infection can be detected in mouse joint after the treatment [9]. Taken together, the above animal data suggest the persistence of some form of B. burgdorferi remnants in animal joints after antibiotic treatment. The molecular mechanisms of this phenomenon are poorly understood. Borrelia burgdorferi sensu lato has several adhesins, which are of critical importance for the virulence [10, 11]. Two such adhesins are decorin binding proteins A and B (DbpA/B) [12?6]. DbpA/B mediate bacterial attachment to decorin, which is a major component at the extracellular matrix, especially in the joint, skin and endothelial tissue [17?9]. The importance of B. burgdorferi adhesion to decorin is further underlined by the partial resistance of decorin deficient mice to LB [20]. Recent mouse data suggest a role for DbpA in the development of joint manifestations in mice [21, 22]. Interestingly, it is suggested that decorin rich tissues, like the joint, might serve as a protective niche for B. burgdorferi where the bacteria can hide from the immune response [23]. The present study was undertaken to test the hypothesis that DbpA and/or B are required for the development of joi.

Imilar scores for the three predictors. (TIF) Figure S8 Kaplan-Meier overall survival stratification between COXEN-matched and unmatched VER-52296 web patients in the TCGA-448 cohort. (A) all patients (B) platinum-sensitive patients, (C) platinum-resistant patients. (TIF) Figure S9 Kaplan-Meier progression-free survival stratification between COXEN-matched and unmatched patients in the TCGA-448 cohort. (A) all patients (B) platinum-sensitive patients, (C) platinum-resistant patients. (TIF) Figure S10 Kaplan-Meier overall survival stratification between COXEN-matched and unmatched patients in the recurrent EOC patients in TCGA-448 cohort. (A) all patients (B) platinum-sensitive patients, (C) platinum-resistant patients. (TIF) Methods S1 Supporting methods.Supporting InformationFigure SROC and AUC analysis of 3 final predictors (A) ROC analysis of paclitaxel prediction of 107 patients in Bonome cohort, (B) ROC of cyclophosphamide prediction of 68 patients in Bonome cohort, (C) ROC of topotecan prediction of 41 patients in TCGA-UW. (TIF)Figure S2 Kaplan-Meier survival analysis of predictedresponders and nonresponders among recurrent EOC patients treated with paclitaxel. (A) all patients, (B) platinumsensitive patients, (C) platinum-resistant patients. (TIF)Figure S3 Kaplan-Meier survival analysis of predictedresponders and nonresponders in independent patient cohorts. (A) paclitaxel predictor prediction for OS in UVA-51, (B) paclitaxel predictor prediction for PFS in UVA-51. (TIF)Figure S4 Kaplan-Meier survival analysis of predicted(DOCX)Results Sresponders and nonresponders among recurrent EOC patients treated with cyclophosphamide. (A) all patients, (B) platinum-sensitive patients, (C) platinum-resistant patients. (TIF)Figure S5 Kaplan-Meier survival analysis of predictedSupporting results.(ZIP)Author ContributionsConceived and designed the experiments: YK SRG SJL KB DT JRD JKL. Performed the experiments: YK JKL. Analyzed the data: YK JKL. Wrote the paper: YK SRG SJL KB DT JKL JRD.responders and nonresponders among recurrent EOC patients treated with topotecan (A) all patients, (B)
In 2011, UNAIDS estimated that more than 34 million people living with HIV, 1.7 m died from an AIDS related disease and 2.5 million became newly infected with HIV. The HIV/AIDS epidemic is continuing to grow; the number of those infected is increasing by more than 500,000 per annum [1]. Discovering how to prevent the transmission of HIV is of primary concern to health care authorities worldwide [2]. It is well known from a range of observational and epidemiological studies that the lifetime risk of acquiring HIV among males can be significantly Chaetocin biological activity reduced by approximately 60 through safe male circumcision (SMC). Numerous papers on the topic have been published over the past two decades to elevate HIV prevention awareness, especially in sub-Saharan countries [3,4,5].In 2009, the US Government (USAID) reported that scaling up male circumcision to reach 80 percent of adult males in 14 African countries by 2015 could potentially avert more than 4 million adult HIV infections between 2009 and 2025 and yield annual cost savings of US 1.4?.8 billion after 2015, with a total net savings of US 20.2 billion between 2009 and 2025 [6,7]. Today, there are over 38 million adolescent and adult males in East and southern Africa who could benefit from safe male circumcision for HIV prevention. The challenge Africa faces is how to safely scale up a surgical procedure in resource limited setting.Imilar scores for the three predictors. (TIF) Figure S8 Kaplan-Meier overall survival stratification between COXEN-matched and unmatched patients in the TCGA-448 cohort. (A) all patients (B) platinum-sensitive patients, (C) platinum-resistant patients. (TIF) Figure S9 Kaplan-Meier progression-free survival stratification between COXEN-matched and unmatched patients in the TCGA-448 cohort. (A) all patients (B) platinum-sensitive patients, (C) platinum-resistant patients. (TIF) Figure S10 Kaplan-Meier overall survival stratification between COXEN-matched and unmatched patients in the recurrent EOC patients in TCGA-448 cohort. (A) all patients (B) platinum-sensitive patients, (C) platinum-resistant patients. (TIF) Methods S1 Supporting methods.Supporting InformationFigure SROC and AUC analysis of 3 final predictors (A) ROC analysis of paclitaxel prediction of 107 patients in Bonome cohort, (B) ROC of cyclophosphamide prediction of 68 patients in Bonome cohort, (C) ROC of topotecan prediction of 41 patients in TCGA-UW. (TIF)Figure S2 Kaplan-Meier survival analysis of predictedresponders and nonresponders among recurrent EOC patients treated with paclitaxel. (A) all patients, (B) platinumsensitive patients, (C) platinum-resistant patients. (TIF)Figure S3 Kaplan-Meier survival analysis of predictedresponders and nonresponders in independent patient cohorts. (A) paclitaxel predictor prediction for OS in UVA-51, (B) paclitaxel predictor prediction for PFS in UVA-51. (TIF)Figure S4 Kaplan-Meier survival analysis of predicted(DOCX)Results Sresponders and nonresponders among recurrent EOC patients treated with cyclophosphamide. (A) all patients, (B) platinum-sensitive patients, (C) platinum-resistant patients. (TIF)Figure S5 Kaplan-Meier survival analysis of predictedSupporting results.(ZIP)Author ContributionsConceived and designed the experiments: YK SRG SJL KB DT JRD JKL. Performed the experiments: YK JKL. Analyzed the data: YK JKL. Wrote the paper: YK SRG SJL KB DT JKL JRD.responders and nonresponders among recurrent EOC patients treated with topotecan (A) all patients, (B)
In 2011, UNAIDS estimated that more than 34 million people living with HIV, 1.7 m died from an AIDS related disease and 2.5 million became newly infected with HIV. The HIV/AIDS epidemic is continuing to grow; the number of those infected is increasing by more than 500,000 per annum [1]. Discovering how to prevent the transmission of HIV is of primary concern to health care authorities worldwide [2]. It is well known from a range of observational and epidemiological studies that the lifetime risk of acquiring HIV among males can be significantly reduced by approximately 60 through safe male circumcision (SMC). Numerous papers on the topic have been published over the past two decades to elevate HIV prevention awareness, especially in sub-Saharan countries [3,4,5].In 2009, the US Government (USAID) reported that scaling up male circumcision to reach 80 percent of adult males in 14 African countries by 2015 could potentially avert more than 4 million adult HIV infections between 2009 and 2025 and yield annual cost savings of US 1.4?.8 billion after 2015, with a total net savings of US 20.2 billion between 2009 and 2025 [6,7]. Today, there are over 38 million adolescent and adult males in East and southern Africa who could benefit from safe male circumcision for HIV prevention. The challenge Africa faces is how to safely scale up a surgical procedure in resource limited setting.

Inically significant levels of externalizing behaviors, with aggression and delinquency most commonly identified (Dubowitz et al., 1994), and African American and white males in kinship care have been found to be at greatest risk for MG-132 biological activity juvenile delinquency (Ryan, Hong, Herz, Hernandez, 2010). In regards to internalizing problems kinship foster youth reported experiencing greater internalizing problems than nonkinship foster youth (Hegar Rosenthal, 2009). Thus, some have concluded that it is unclear whether kinship foster care has any advantage over nonkinship foster care due to the significant prevalence of emotional and behavioral problems in these youth. This conclusion is supported by research showing no significant differences between behavioral problems in kinship and nonkinship foster youth (Shore, Sim, Le Prohn, Keller, 2002). There is evidence that children in kinship foster care may fare similarly to youth in nonkinship foster homes, and that both groups show poorer mental health outcomes than youth in the general population. Mixed findings across studies may relate to the limitations of research on youth placed in out of home settings. Heterogeneity exists in the samples under investigation; some studies examine families placed into foster homes through government policy, while others include informal kinship foster placements. In addition, the reason for order PD150606 placement may confound findings, in that there may be a selection bias due to differences that exist between kinshipAuthor Manuscript Author Manuscript Author Manuscript Author ManuscriptJ Soc Serv Res. Author manuscript; available in PMC 2016 February 25.Rufa and FowlerPageand nonkinship foster youth and the prevailing reasons for their removal from the home. Research suggests caseworkers may have reservations about use kinship care due to complicated implications based in policy and family relationships (Peters, 2005). For example, youth may be less likely to be placed with relatives or other kin in instances of more serious or pervasive forms of abuse. These reasons for removal and placement may contribute to mental health outcomes, and may be related to the mixed results found when studying kinship foster youth. A recent study attempted to address the confounding role of selection bias by statistically adjusting for differential reasons for placement into out-of-home placement settings (Barth, Guo, Green, McCrae, 2007a). Findings suggested that children placed in kinship care presented significantly better mental health outcomes after accounting for the selective processes that contributed to placement decisions and could influence child outcomes, including child and caregiver characteristics and investigation findings. Specifically, kinship care promoted better outcomes for youth placed out of the home, especially in externalizing behavioral outcomes. Internalizing behavioral scores improved for children placed in both kinship and nonkinship care, but there was a greater improvement in children placed in kinship care. These findings are promising for the use of kinship settings; however, they represent average effects across all youth. Differential use and characteristics of kinship homes among African American youth warrant additional investigation.Author Manuscript Author Manuscript Author Manuscript Author ManuscriptKinship Care and African American FamiliesWhile research has suggested that kinship care may be beneficial for out-of-home placement, it is unclear.Inically significant levels of externalizing behaviors, with aggression and delinquency most commonly identified (Dubowitz et al., 1994), and African American and white males in kinship care have been found to be at greatest risk for juvenile delinquency (Ryan, Hong, Herz, Hernandez, 2010). In regards to internalizing problems kinship foster youth reported experiencing greater internalizing problems than nonkinship foster youth (Hegar Rosenthal, 2009). Thus, some have concluded that it is unclear whether kinship foster care has any advantage over nonkinship foster care due to the significant prevalence of emotional and behavioral problems in these youth. This conclusion is supported by research showing no significant differences between behavioral problems in kinship and nonkinship foster youth (Shore, Sim, Le Prohn, Keller, 2002). There is evidence that children in kinship foster care may fare similarly to youth in nonkinship foster homes, and that both groups show poorer mental health outcomes than youth in the general population. Mixed findings across studies may relate to the limitations of research on youth placed in out of home settings. Heterogeneity exists in the samples under investigation; some studies examine families placed into foster homes through government policy, while others include informal kinship foster placements. In addition, the reason for placement may confound findings, in that there may be a selection bias due to differences that exist between kinshipAuthor Manuscript Author Manuscript Author Manuscript Author ManuscriptJ Soc Serv Res. Author manuscript; available in PMC 2016 February 25.Rufa and FowlerPageand nonkinship foster youth and the prevailing reasons for their removal from the home. Research suggests caseworkers may have reservations about use kinship care due to complicated implications based in policy and family relationships (Peters, 2005). For example, youth may be less likely to be placed with relatives or other kin in instances of more serious or pervasive forms of abuse. These reasons for removal and placement may contribute to mental health outcomes, and may be related to the mixed results found when studying kinship foster youth. A recent study attempted to address the confounding role of selection bias by statistically adjusting for differential reasons for placement into out-of-home placement settings (Barth, Guo, Green, McCrae, 2007a). Findings suggested that children placed in kinship care presented significantly better mental health outcomes after accounting for the selective processes that contributed to placement decisions and could influence child outcomes, including child and caregiver characteristics and investigation findings. Specifically, kinship care promoted better outcomes for youth placed out of the home, especially in externalizing behavioral outcomes. Internalizing behavioral scores improved for children placed in both kinship and nonkinship care, but there was a greater improvement in children placed in kinship care. These findings are promising for the use of kinship settings; however, they represent average effects across all youth. Differential use and characteristics of kinship homes among African American youth warrant additional investigation.Author Manuscript Author Manuscript Author Manuscript Author ManuscriptKinship Care and African American FamiliesWhile research has suggested that kinship care may be beneficial for out-of-home placement, it is unclear.

Interviews, chart review, and clinician report) caused ambiguity–Two capability determinations were ambiguous due to discrepancies between information collected from participant interviews, chart review, and clinician report. In both examples, the participants described themselves as more capable than was indicated in data from patient charts or from treating clinicians.Author Manuscript Author Manuscript Author Manuscript Author ManuscriptDiscussionDetermining financial capability is complicated. One reason capability is difficult to judge is that managing a limited income, with or without a disabling illness, is very difficult. The challenges disabled people face–poverty, substance use (21), gambling (22), crime, financial dysfunction, psychiatric symptomatology (23) and financial predation (6) — contribute to their financial difficulties. Most beneficiaries and, in fact, most people do not spend all of their funds on basic needs. A Bureau of Labor Statistics report found that Americans in the lowest, middle, and highest income quintiles spend 7?0 of their income on nonessential items and that those in the lowest quintile spend a greater percentage of their money than those in the highest quintile on basic necessities such as housing, food, utilities, fuels and public services, healthcare, and medications (24, 25).Emerging literature suggests that because of the stresses of poverty, it is particularly difficult for someone who is poor to exert the planning, self-control and attention needed to resist unnecessary purchases (26). Second, determinations of the amount of nonessential or harmful spending and the circumstances around such spending that would merit payee assignment is a subjective judgment with few guidelines. The Social Security Administration guidelines about how representative payees must use a beneficiary’s monthly benefits allow for some nonessential purchases (i.e. clothing and recreation), but only after food and shelter are provided for (27). This paper highlights areas requiring special deliberation. Clinicians assessing financial capability need to consider the extent of the harm spending patterns have on the individual being assessed (i.e. misspending that results in a few missed meals might cause minor discomfort but not measureable harm, whereas misspending that results in an inability to pay for rent may be very harmful). When looking at harmful spending, clinicians should discern whether the beneficiary has a financial problem or an addiction problem. If improved financial skills or payee assignment would not impact the acquisition of drugs of abuse, then the beneficiaries’ substance use probably does not reflect financial incapability. Another important issue that clinicians face when making determinations about beneficiaries’ ability to manage funds is attempting to predict future functioning, which is inherently uncertain. There is Vasoactive Intestinal Peptide (human, rat, mouse, rabbit, canine, Shikonin web porcine) web evidence that clinicians have difficulty predicting behaviors such as future medication adherence (28, 29), so some uncertainty in predicting financialPsychiatr Serv. Author manuscript; available in PMC 2016 March 01.Lazar et al.Pagecapability is to be expected. Frequent reevaluations of financial capability might help with complicated determinations. Extensive and serial evaluations of capability to manage one’s funds are probably beyond the mandate and the resources of the Social Security Administration, but re-evaluating the capability of beneficiaries who are admitted to.Interviews, chart review, and clinician report) caused ambiguity–Two capability determinations were ambiguous due to discrepancies between information collected from participant interviews, chart review, and clinician report. In both examples, the participants described themselves as more capable than was indicated in data from patient charts or from treating clinicians.Author Manuscript Author Manuscript Author Manuscript Author ManuscriptDiscussionDetermining financial capability is complicated. One reason capability is difficult to judge is that managing a limited income, with or without a disabling illness, is very difficult. The challenges disabled people face–poverty, substance use (21), gambling (22), crime, financial dysfunction, psychiatric symptomatology (23) and financial predation (6) — contribute to their financial difficulties. Most beneficiaries and, in fact, most people do not spend all of their funds on basic needs. A Bureau of Labor Statistics report found that Americans in the lowest, middle, and highest income quintiles spend 7?0 of their income on nonessential items and that those in the lowest quintile spend a greater percentage of their money than those in the highest quintile on basic necessities such as housing, food, utilities, fuels and public services, healthcare, and medications (24, 25).Emerging literature suggests that because of the stresses of poverty, it is particularly difficult for someone who is poor to exert the planning, self-control and attention needed to resist unnecessary purchases (26). Second, determinations of the amount of nonessential or harmful spending and the circumstances around such spending that would merit payee assignment is a subjective judgment with few guidelines. The Social Security Administration guidelines about how representative payees must use a beneficiary’s monthly benefits allow for some nonessential purchases (i.e. clothing and recreation), but only after food and shelter are provided for (27). This paper highlights areas requiring special deliberation. Clinicians assessing financial capability need to consider the extent of the harm spending patterns have on the individual being assessed (i.e. misspending that results in a few missed meals might cause minor discomfort but not measureable harm, whereas misspending that results in an inability to pay for rent may be very harmful). When looking at harmful spending, clinicians should discern whether the beneficiary has a financial problem or an addiction problem. If improved financial skills or payee assignment would not impact the acquisition of drugs of abuse, then the beneficiaries’ substance use probably does not reflect financial incapability. Another important issue that clinicians face when making determinations about beneficiaries’ ability to manage funds is attempting to predict future functioning, which is inherently uncertain. There is evidence that clinicians have difficulty predicting behaviors such as future medication adherence (28, 29), so some uncertainty in predicting financialPsychiatr Serv. Author manuscript; available in PMC 2016 March 01.Lazar et al.Pagecapability is to be expected. Frequent reevaluations of financial capability might help with complicated determinations. Extensive and serial evaluations of capability to manage one’s funds are probably beyond the mandate and the resources of the Social Security Administration, but re-evaluating the capability of beneficiaries who are admitted to.

Ta-based, less error-prone procedure, present findings that 7 non-stuttered disfluency criterion is highly specific and should result in greater accuracy in talker-group classification and help augment the accuracy of the existing 3 stuttered disfluency criterion when employed conjointly. Influence of expressive vocabulary on preschoolers’ non-stuttered disfluencies–In R848MedChemExpress S28463 partial support of the third hypothesis, expressive vocabulary size, as measured by the EVT, was shown to be associated with the BUdR biological activity frequency of non-stuttered disfluencies in both talker groups. For both talker groups, children who exhibited lower expressive vocabulary scores, produced more non-stuttered disfluencies. This finding corroborates an existing body of research suggesting that children’s language skill and nonstuttered or “normal” disfluencies are related (Boscolo et al., 2002; Wagovich, Hall, Clifford, 2009; Westby, 1979). In fact, literature on sentence formulation in adults and the literature on fluency and language interactions in children who stutter and children withNIH-PA Author Manuscript NIH-PA Author Manuscript NIH-PA Author ManuscriptJ Commun Disord. Author manuscript; available in PMC 2015 May 01.Tumanova et al.Pagenormal fluency (Bernstein Ratner, 1997; Boscolo et al., 2002; Masterson Kamhi, 1991; Richels et al., 2010; Yaruss et al., 1999; Zackheim Conture, 2003) suggest that language formulation difficulties or task variations contribute to fluency breakdown. Perhaps, children with a smaller expressive vocabulary may experience ?during typical conversational discourse ?more word-finding difficulties, leading to a larger number of non-stuttered disfluencies. It should be kept in mind, however, that the relation between EVT standard score and frequency of non-stuttered disfluencies, although statistically significant, is very subtle ( = -0.008) and thus may have minimal clinical significance. Indeed, standardized tests may be less than sensitive to the dynamic, rapid and subtle conversational interaction between children’s speech disfluencies and concurrent syntactic, lexical and phonological/articulatory processes. Thus, a more comprehensive understanding of this interaction, we suggest, most likely must await further empirical study. Influence of age on preschoolers’ speech disfluencies–In partial support of the third hypothesis, we found that age was associated with the frequency of non-stuttered disfluencies, such that older preschool-age children produced more non-stuttered disfluencies. This association is consistent with Ambrose and Yairi’s (1999) finding of a non-significant trend for increase of non-stuttered disfluencies with age in their sample of preschool-age children who do and do not stutter. Of course, children’s preschool years (2? years of age) represents a time of rapid development of speech and language. Indeed, the present finding that older preschool-age children produced more normal disfluencies seems to suggest that the quantitative and qualitative changes in language that happen during this age may be associated with an increase in non-stuttered disfluencies. However, similarly to the EVT association with disfluencies, the association between age and frequency of nonstuttered disfluencies was very subtle ( = .008) and thus may have minimal clinical significance. Influence of gender on preschoolers’ non-stuttered and total disfluencies–In partial support of the third hypothesis, we found that gender was associated wit.Ta-based, less error-prone procedure, present findings that 7 non-stuttered disfluency criterion is highly specific and should result in greater accuracy in talker-group classification and help augment the accuracy of the existing 3 stuttered disfluency criterion when employed conjointly. Influence of expressive vocabulary on preschoolers’ non-stuttered disfluencies–In partial support of the third hypothesis, expressive vocabulary size, as measured by the EVT, was shown to be associated with the frequency of non-stuttered disfluencies in both talker groups. For both talker groups, children who exhibited lower expressive vocabulary scores, produced more non-stuttered disfluencies. This finding corroborates an existing body of research suggesting that children’s language skill and nonstuttered or “normal” disfluencies are related (Boscolo et al., 2002; Wagovich, Hall, Clifford, 2009; Westby, 1979). In fact, literature on sentence formulation in adults and the literature on fluency and language interactions in children who stutter and children withNIH-PA Author Manuscript NIH-PA Author Manuscript NIH-PA Author ManuscriptJ Commun Disord. Author manuscript; available in PMC 2015 May 01.Tumanova et al.Pagenormal fluency (Bernstein Ratner, 1997; Boscolo et al., 2002; Masterson Kamhi, 1991; Richels et al., 2010; Yaruss et al., 1999; Zackheim Conture, 2003) suggest that language formulation difficulties or task variations contribute to fluency breakdown. Perhaps, children with a smaller expressive vocabulary may experience ?during typical conversational discourse ?more word-finding difficulties, leading to a larger number of non-stuttered disfluencies. It should be kept in mind, however, that the relation between EVT standard score and frequency of non-stuttered disfluencies, although statistically significant, is very subtle ( = -0.008) and thus may have minimal clinical significance. Indeed, standardized tests may be less than sensitive to the dynamic, rapid and subtle conversational interaction between children’s speech disfluencies and concurrent syntactic, lexical and phonological/articulatory processes. Thus, a more comprehensive understanding of this interaction, we suggest, most likely must await further empirical study. Influence of age on preschoolers’ speech disfluencies–In partial support of the third hypothesis, we found that age was associated with the frequency of non-stuttered disfluencies, such that older preschool-age children produced more non-stuttered disfluencies. This association is consistent with Ambrose and Yairi’s (1999) finding of a non-significant trend for increase of non-stuttered disfluencies with age in their sample of preschool-age children who do and do not stutter. Of course, children’s preschool years (2? years of age) represents a time of rapid development of speech and language. Indeed, the present finding that older preschool-age children produced more normal disfluencies seems to suggest that the quantitative and qualitative changes in language that happen during this age may be associated with an increase in non-stuttered disfluencies. However, similarly to the EVT association with disfluencies, the association between age and frequency of nonstuttered disfluencies was very subtle ( = .008) and thus may have minimal clinical significance. Influence of gender on preschoolers’ non-stuttered and total disfluencies–In partial support of the third hypothesis, we found that gender was associated wit.

Uggesting that these factors may confound the association between sexual violence perpetrated by police and risk behaviours. The Poisson regression model used a Pearson’s chi-square correction to account for overdispersion in the data. Spearman’s correlations were used to assess correlations between independent Cibinetide chemical information variables and covariates, and no pair of variables included in regression models wasstrongly correlated (r !0.40). We performed all analyses using SAS, applying a two-sided significance level of 0.05. Qualitative We used Nvivo 10 software [14] to code and analyze qualitative data using a content analysis approach based on theoretical memos [15]. Two coders (FL and KL) conducted multiple coding cycles based on consensus to formulate units of organization and analytic codes. We used constant comparative coding such as systematic and far-out comparisons and focused coding to identify recurrent themes and patterns [16].ResultsSurvey The demographics and clinical characteristics shown in Table 1 suggest that a number of risk factors and behaviours are common in this cohort of Russian HIV-positive women who inject drugs. Of note, while a higher proportion of those reporting sexual violence from police also reported involvement in transactional sex, most affected women in this cohort were not sex workers. We documented that almost a quarter (24.1 ; 95 CI, 18.6 , 29.7 ) of all women reported having been forced to have sex with a police HS-173 structure officer (Table 2). The proportions reporting punitive policing practices appeared higher among victims of sexual violence than for those who were not victims. Regression analyses did not show significant associations between the main independent variable reported sexual violence from police and the outcomes of current IDU, needle sharing or lifetime overdose. However, women who reported having been forced to have sex with a police officer reported more frequent drug injections (Table 3).Table 1. Demographics and clinical characteristics of all HIV-positive women who inject drugs in the Russian HERMITAGE cohort stratified by history of sexual violence from police (n 0228)Reported sexual Overall n 0228 Mean age (SD) Education status beyond primary Incarceration, lifetime Injected drugs over 20 times in the past 30 days Stigma score (mean)a Depressive symptoms (BDI-II) Ever been on ART !1 Year Since HIV Diagnosis Risky alcohol use in the past 30 days Selling Sex for drugs or money, lifetime Victim of intimate partner violence, lifetime Childhood sexual abuse Overdose events, lifetime Any suicide attempts, past 3 months 29.0 (5.4) 123 (53.9 ) 65 (28.5 ) 87 (38.2 ) 24 (4.7) 179 (78.5 ) 68 (29.8 ) 180 (78.9 ) 175 (76.8 ) 40 (17.5 ) 185 (81.1 ) 33 (14.5 ) 164 (71.9 ) 13 (5.7 ) violence from police n055 29.0 (4.8) 30 (54.5 ) 15 (27.3 ) 28 (50.9 ) 24 (4.9) 44 (80.0 ) 14 (25.5 ) 47 (85.5 ) 42 (76.4 ) 18 (32.7 ) 47 (85.5 ) 9 (16.4 ) 44 (80.0 ) 3 (5.5 ) 18.7 (29.7) Did not report sexual violence from police n 0173 29.0 (5.6) 93 (53.8 ) 50 (28.9 ) 59 (34.1 ) 24 (4.6) 135 (78.0 ) 54 (31.2 ) 133 (76.9 ) 133 (76.9 ) 22 (12.7 ) 138 (79.8 ) 24 (13.9 ) 120 (69.4 ) 10 (5.8 ) 19.1 (40.0) p 0.99 0.92 0.82 0.03 0.87 0.76 0.42 0.17 0.94 B0.01 0.35 0.65 0.13 0.93 0.Mean number of unprotected sexual encounters in the past 30 days (SD) 19.0 (37.7)aBerger stigma scale; higher score means more stigma.Lunze K et al. Journal of the International AIDS Society 2016, 19(Suppl 3):20877 http://www.jiasociety.org/index.php/jias/article/view/.Uggesting that these factors may confound the association between sexual violence perpetrated by police and risk behaviours. The Poisson regression model used a Pearson’s chi-square correction to account for overdispersion in the data. Spearman’s correlations were used to assess correlations between independent variables and covariates, and no pair of variables included in regression models wasstrongly correlated (r !0.40). We performed all analyses using SAS, applying a two-sided significance level of 0.05. Qualitative We used Nvivo 10 software [14] to code and analyze qualitative data using a content analysis approach based on theoretical memos [15]. Two coders (FL and KL) conducted multiple coding cycles based on consensus to formulate units of organization and analytic codes. We used constant comparative coding such as systematic and far-out comparisons and focused coding to identify recurrent themes and patterns [16].ResultsSurvey The demographics and clinical characteristics shown in Table 1 suggest that a number of risk factors and behaviours are common in this cohort of Russian HIV-positive women who inject drugs. Of note, while a higher proportion of those reporting sexual violence from police also reported involvement in transactional sex, most affected women in this cohort were not sex workers. We documented that almost a quarter (24.1 ; 95 CI, 18.6 , 29.7 ) of all women reported having been forced to have sex with a police officer (Table 2). The proportions reporting punitive policing practices appeared higher among victims of sexual violence than for those who were not victims. Regression analyses did not show significant associations between the main independent variable reported sexual violence from police and the outcomes of current IDU, needle sharing or lifetime overdose. However, women who reported having been forced to have sex with a police officer reported more frequent drug injections (Table 3).Table 1. Demographics and clinical characteristics of all HIV-positive women who inject drugs in the Russian HERMITAGE cohort stratified by history of sexual violence from police (n 0228)Reported sexual Overall n 0228 Mean age (SD) Education status beyond primary Incarceration, lifetime Injected drugs over 20 times in the past 30 days Stigma score (mean)a Depressive symptoms (BDI-II) Ever been on ART !1 Year Since HIV Diagnosis Risky alcohol use in the past 30 days Selling Sex for drugs or money, lifetime Victim of intimate partner violence, lifetime Childhood sexual abuse Overdose events, lifetime Any suicide attempts, past 3 months 29.0 (5.4) 123 (53.9 ) 65 (28.5 ) 87 (38.2 ) 24 (4.7) 179 (78.5 ) 68 (29.8 ) 180 (78.9 ) 175 (76.8 ) 40 (17.5 ) 185 (81.1 ) 33 (14.5 ) 164 (71.9 ) 13 (5.7 ) violence from police n055 29.0 (4.8) 30 (54.5 ) 15 (27.3 ) 28 (50.9 ) 24 (4.9) 44 (80.0 ) 14 (25.5 ) 47 (85.5 ) 42 (76.4 ) 18 (32.7 ) 47 (85.5 ) 9 (16.4 ) 44 (80.0 ) 3 (5.5 ) 18.7 (29.7) Did not report sexual violence from police n 0173 29.0 (5.6) 93 (53.8 ) 50 (28.9 ) 59 (34.1 ) 24 (4.6) 135 (78.0 ) 54 (31.2 ) 133 (76.9 ) 133 (76.9 ) 22 (12.7 ) 138 (79.8 ) 24 (13.9 ) 120 (69.4 ) 10 (5.8 ) 19.1 (40.0) p 0.99 0.92 0.82 0.03 0.87 0.76 0.42 0.17 0.94 B0.01 0.35 0.65 0.13 0.93 0.Mean number of unprotected sexual encounters in the past 30 days (SD) 19.0 (37.7)aBerger stigma scale; higher score means more stigma.Lunze K et al. Journal of the International AIDS Society 2016, 19(Suppl 3):20877 http://www.jiasociety.org/index.php/jias/article/view/.

………….. 114 PP58 web Apanteles carlosguadamuzi Fern dez-Triana, sp. n…………………………….. 115 Apanteles carlosrodriguezi Fern dez-Triana, sp. n. …………………………….. 116 Apanteles carlosviquezi Fern dez-Triana, sp. n. ………………………………… 118 Apanteles carloszunigai Fern dez-Triana, sp. n. ………………………………… 118 Apanteles carolinacanoae Fern dez-Triana, sp. n. ……………………………… 120 Apanteles carpatus (Say, 1836)…………………………………………………………. 121 Apanteles christianzunigai Fern dez-Triana, sp. n. ……………………………. 123 Apanteles cinthiabarrantesae Fern dez-Triana, sp. n. …………………………. 124 Apanteles ciriloumanai Fern dez-Triana, sp. n. ………………………………… 125 Apanteles coffeellae Muesebeck, 1958 ……………………………………………….. 126 Apanteles cristianalemani Fern dez-Triana, sp. n. …………………………….. 127 Apanteles cynthiacorderoae Fern dez-Triana, sp. n. ……………………………. 129 Apanteles deifiliadavilae Fern dez-Triana, sp. n. ……………………………….Jose L. Fernandez-Triana et al. / ZooKeys 383: 1?65 (2014)Apanteles deplanatus Muesebeck, 1957 …………………………………………….. 131 Apanteles diatraeae Muesebeck, 1921 ……………………………………………….. 132 Apanteles dickyui Fern dez-Triana, sp. n…………………………………………. 133 Apanteles didiguadamuzi Fern dez-Triana, sp. n. ……………………………… 135 Apanteles diegoalpizari Fern dez-Triana, sp. n. ………………………………… 136 Apanteles diegotorresi Fern dez-Triana, sp. n. …………………………………… 137 Apanteles diniamartinezae Fern dez-Triana, sp. n. ……………………………. 139 Apanteles duniagarciae Fern dez-Triana, sp. n. ………………………………… 140 Apanteles duvalierbricenoi Fern dez-Triana, sp. n. ……………………………. 141 Apanteles edgarjimenezi Fern dez-Triana, sp. n. ……………………………….. 142 Apanteles get NVP-BEZ235 edithlopezae Fern dez-Triana, sp. n. …………………………………. 143 Apanteles eduardoramirezi Fern dez-Triana, sp. n. ……………………………. 145 Apanteles edwinapui Fern dez-Triana, sp. n…………………………………….. 146 Apanteles eldarayae Fern dez-Triana, sp. n………………………………………. 147 Apanteles eliethcantillanoae Fern dez-Triana, sp. n. ………………………….. 149 Apanteles erickduartei Fern dez-Triana, sp. n…………………………………… 150 Apanteles esthercentenoae Fern dez-Triana, sp. n. ……………………………… 151 Apanteles eugeniaphilipsae Fern dez-Triana, sp. n. ……………………………. 153 Apanteles eulogiosequeirai Fern dez-Triana, sp. n. …………………………….. 154 Apanteles federicomatarritai Fern dez-Triana, sp. n. ………………………….. 155 Apanteles felipechavarriai Fern dez-Triana, sp. n. …………………………….. 156 Apanteles felixcarmonai Fern dez-Triana, sp. n. ……………………………….. 157 Apanteles fernandochavarriai Fern dez-Triana, sp. n. ………………………… 158 Apanteles flormoralesae Fern dez-Triana, sp. n. ………………………………… 160 Apanteles franciscopizarroi Fern dez-Tri…………… 114 Apanteles carlosguadamuzi Fern dez-Triana, sp. n…………………………….. 115 Apanteles carlosrodriguezi Fern dez-Triana, sp. n. …………………………….. 116 Apanteles carlosviquezi Fern dez-Triana, sp. n. ………………………………… 118 Apanteles carloszunigai Fern dez-Triana, sp. n. ………………………………… 118 Apanteles carolinacanoae Fern dez-Triana, sp. n. ……………………………… 120 Apanteles carpatus (Say, 1836)…………………………………………………………. 121 Apanteles christianzunigai Fern dez-Triana, sp. n. ……………………………. 123 Apanteles cinthiabarrantesae Fern dez-Triana, sp. n. …………………………. 124 Apanteles ciriloumanai Fern dez-Triana, sp. n. ………………………………… 125 Apanteles coffeellae Muesebeck, 1958 ……………………………………………….. 126 Apanteles cristianalemani Fern dez-Triana, sp. n. …………………………….. 127 Apanteles cynthiacorderoae Fern dez-Triana, sp. n. ……………………………. 129 Apanteles deifiliadavilae Fern dez-Triana, sp. n. ……………………………….Jose L. Fernandez-Triana et al. / ZooKeys 383: 1?65 (2014)Apanteles deplanatus Muesebeck, 1957 …………………………………………….. 131 Apanteles diatraeae Muesebeck, 1921 ……………………………………………….. 132 Apanteles dickyui Fern dez-Triana, sp. n…………………………………………. 133 Apanteles didiguadamuzi Fern dez-Triana, sp. n. ……………………………… 135 Apanteles diegoalpizari Fern dez-Triana, sp. n. ………………………………… 136 Apanteles diegotorresi Fern dez-Triana, sp. n. …………………………………… 137 Apanteles diniamartinezae Fern dez-Triana, sp. n. ……………………………. 139 Apanteles duniagarciae Fern dez-Triana, sp. n. ………………………………… 140 Apanteles duvalierbricenoi Fern dez-Triana, sp. n. ……………………………. 141 Apanteles edgarjimenezi Fern dez-Triana, sp. n. ……………………………….. 142 Apanteles edithlopezae Fern dez-Triana, sp. n. …………………………………. 143 Apanteles eduardoramirezi Fern dez-Triana, sp. n. ……………………………. 145 Apanteles edwinapui Fern dez-Triana, sp. n…………………………………….. 146 Apanteles eldarayae Fern dez-Triana, sp. n………………………………………. 147 Apanteles eliethcantillanoae Fern dez-Triana, sp. n. ………………………….. 149 Apanteles erickduartei Fern dez-Triana, sp. n…………………………………… 150 Apanteles esthercentenoae Fern dez-Triana, sp. n. ……………………………… 151 Apanteles eugeniaphilipsae Fern dez-Triana, sp. n. ……………………………. 153 Apanteles eulogiosequeirai Fern dez-Triana, sp. n. …………………………….. 154 Apanteles federicomatarritai Fern dez-Triana, sp. n. ………………………….. 155 Apanteles felipechavarriai Fern dez-Triana, sp. n. …………………………….. 156 Apanteles felixcarmonai Fern dez-Triana, sp. n. ……………………………….. 157 Apanteles fernandochavarriai Fern dez-Triana, sp. n. ………………………… 158 Apanteles flormoralesae Fern dez-Triana, sp. n. ………………………………… 160 Apanteles franciscopizarroi Fern dez-Tri.

Model at 140 mM and 1 mM chloride, respectively. The stimulus protocol and analysis were the same as the biophysical measures. Note the DM-3189 web similarity to the biophysical data. (E) Cm versus frequency as measured by the fast two-state Boltzmann model (forward/backward rate constants of 1.5e5 s?). Note the absence of NLC decline across frequency. (F) Cm versus frequency as measured by the slower two-state Boltzmann model (forward/backward rate constants of 0.5e4 s?). Note the gradual roll-off due to reduced single-exponential transitions. (G) Cm versus frequency as measured by the electrical cell model with Rs ?10 MU, Rm ?300 MU, Cm ?17 pF, all nominal. Note the flat Cm response across frequency and voltage. (H) Cm versus frequency as measured by the same electrical model, with an additional 5 pF Cm switched in using a magnetically activated reed relay with minimal additional stray capacitance. To see this figure in color, go online.2556 Biophysical Journal 110, 2551?561, June 7,Chloride Controls AZD3759 msds prestin Kineticshighlighting, in the case of the OHC, the need to consider interrogation frequency effects when assessing prestin’s voltage-sensor Qmax, namely, total sensor charge in a given cell. DISCUSSION Characterizing sensor-charge movement in voltage-sensitive proteins provides a host of important information on protein function, including operating voltage range and maximum charge moved (Qmax). The latter metric aids in quantifying protein content within the membrane, and our data indicate that prestin may be present at densities higher than the long-held estimates (26,36). For over a decade, chloride has been believed to be a key player in prestin function (13?6), influencing the quantity of measured sensor charge. However, our new data point to a role of chloride in controlling prestin kinetics and not in limiting the quantity of charge movement. Indeed, we previously showed that the maximum OHC eM magnitude, which is expected to correspond to the charge moved, since eM is voltagedriven, is little affected by chloride (18). Does chloride underlie prestin’s voltage-driven charge movement? Zheng et al. (7) identified the OHC molecular motor as the fifth member of the mammalian SLC26 family of anion exchangers, of which 10 members have been identified (5,37). These anion exchangers facilitate the transmembrane movements of monovalent and divalent anions; however, prestin’s transport capabilities are controversial, with some studies showing transport capabilities and others not (38?3). It is interesting to note that the influence of anions on NLC had been observed before the identification of prestin. For example, lipophilic anions, but not cations, were shown to influence OHC eM and NLC (44), and it has been known since the mid 1990s that the anion salicylate blocks NLC and eM, working on the intracellular aspect of the OHC (45,46). Notwithstanding the controversy of anion transport, the existence of voltage-dependent displacement currents, or NLC, has been taken to indicate an evolutionary change that enables eM, since SLC26a5’s closest mammalian homolog, SLC26a6, lacks this capability, as assessed by standard high-frequency admittance techniques (13). Whether other SLC26 family members actually possess NLC is a subject for future investigation, since our data indicate that we must now consider the occurrence of charge movements that are slower than typically expected. Should other family members possess slow voltage-sensor charge movements,.Model at 140 mM and 1 mM chloride, respectively. The stimulus protocol and analysis were the same as the biophysical measures. Note the similarity to the biophysical data. (E) Cm versus frequency as measured by the fast two-state Boltzmann model (forward/backward rate constants of 1.5e5 s?). Note the absence of NLC decline across frequency. (F) Cm versus frequency as measured by the slower two-state Boltzmann model (forward/backward rate constants of 0.5e4 s?). Note the gradual roll-off due to reduced single-exponential transitions. (G) Cm versus frequency as measured by the electrical cell model with Rs ?10 MU, Rm ?300 MU, Cm ?17 pF, all nominal. Note the flat Cm response across frequency and voltage. (H) Cm versus frequency as measured by the same electrical model, with an additional 5 pF Cm switched in using a magnetically activated reed relay with minimal additional stray capacitance. To see this figure in color, go online.2556 Biophysical Journal 110, 2551?561, June 7,Chloride Controls Prestin Kineticshighlighting, in the case of the OHC, the need to consider interrogation frequency effects when assessing prestin’s voltage-sensor Qmax, namely, total sensor charge in a given cell. DISCUSSION Characterizing sensor-charge movement in voltage-sensitive proteins provides a host of important information on protein function, including operating voltage range and maximum charge moved (Qmax). The latter metric aids in quantifying protein content within the membrane, and our data indicate that prestin may be present at densities higher than the long-held estimates (26,36). For over a decade, chloride has been believed to be a key player in prestin function (13?6), influencing the quantity of measured sensor charge. However, our new data point to a role of chloride in controlling prestin kinetics and not in limiting the quantity of charge movement. Indeed, we previously showed that the maximum OHC eM magnitude, which is expected to correspond to the charge moved, since eM is voltagedriven, is little affected by chloride (18). Does chloride underlie prestin’s voltage-driven charge movement? Zheng et al. (7) identified the OHC molecular motor as the fifth member of the mammalian SLC26 family of anion exchangers, of which 10 members have been identified (5,37). These anion exchangers facilitate the transmembrane movements of monovalent and divalent anions; however, prestin’s transport capabilities are controversial, with some studies showing transport capabilities and others not (38?3). It is interesting to note that the influence of anions on NLC had been observed before the identification of prestin. For example, lipophilic anions, but not cations, were shown to influence OHC eM and NLC (44), and it has been known since the mid 1990s that the anion salicylate blocks NLC and eM, working on the intracellular aspect of the OHC (45,46). Notwithstanding the controversy of anion transport, the existence of voltage-dependent displacement currents, or NLC, has been taken to indicate an evolutionary change that enables eM, since SLC26a5’s closest mammalian homolog, SLC26a6, lacks this capability, as assessed by standard high-frequency admittance techniques (13). Whether other SLC26 family members actually possess NLC is a subject for future investigation, since our data indicate that we must now consider the occurrence of charge movements that are slower than typically expected. Should other family members possess slow voltage-sensor charge movements,.